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official schedule and Saturday updated version, Fora.TV recordings, backchan.nl, kanzure's live transcripts

Motivation

• Discovered in Hplus Summit Harvard
• Because of the PDT schedule and my own interest I will try to focus on Theme 2: The Scientific Process and Theme 4: The Open Innovation Paradigm

Introduction, Q&A (started at about 4:42pm PDT)

• presentation of several participants including
  • Home Carole Goble admin of myExperiment (linked before at ElegantSolutions#ExperimentsTools)
  • member of Mendeley (linked before at Education)
• Q&A with the 4 panelists
  • definition of OpenScience
    • open=available to anyone in the world to do whatever they want with it without any restriction
  • pre-publication vs. post-publication selection vs. "radical" sharing
    • including data

(feed down from ~5pm to ~5:30pm)

Short Talks

• talks start at ~5:35pm
  • Mike Gretes, Neglected Disease R&D http://www.mindthehealthgap.org
  • Victoria Stodden, Two Ideas for Open Science
    • ~5:50pm reproducible research standard text+figures=CC-BY code=BSD data=CC0 (Stodden, 2009)
  • Peter Murray-Rust from http://www.okfn.org and his flower
    • his slides
    • http://www.openthesis.org http://opcit.eprints.org http://wiki.okfn.org/wg/bibliography
      • all very interesting for Seedea:Research/Datasets
  • Morgan Langille, BioTorrents
    • discovered through #hplusroadmap earlier
    • Wikipedia:Metalink
  • Jason Hoyt, Mendeley Research Networks
    • http://www.mendeley.com/blog/
    • http://www.mendeley.com/oapi/ (yet requiring registration)
    • discovered a bit more than a year ago (August 2009)
  • Martha Bagnell, http://www.thirdreviewer.com
  • DJ Strouse & Casey Stark presenting CoLab
    • science "live" principle sounds close to http://www.college-de-france.fr founding principle
    • mention of http://www.quantiki.org
    • specialized wiki (but based on Django?) running on NASA Nebula
    • making an issue private then public once it's done seems close to french mathematical society and it's "plis cachetes"
    • http://github.com/caseywstark/colab
      • MIT license (no aGPL on the website)
  • Jason Levitt, Kaltura
    • http://corp.kaltura.com and http://www.kaltura.org
    • aiming to put videos on Wikipedia in collaboration with WikiMedia
    • http://www.kaltura.org/demonstrations
  • Doug Hershberger, BayBIFX
    • Open Bioinformatics Foundation or O|B|F
    • mention of BioHackathon 2010, 3rd DBCLS BioHackathon held earlier this year in Japan
  • Josh Perfetto, OpenPCR
    • discovered a while ago, cf Biology
  • James Peyer, Open Biotech Education, OTYP
    • hands-on principle, similar to my Programming#LiveCoding recommendation
    • http://www.kickstarter.com/projects/peyer/hello-world-modern-biotechnology-for-high-schools
    • BioBricks for standardization
      • discovered a while ago, cf Biology
  • Todd Kuiken, Responsible Science for DIY biologists
    • "safe" citizen science
      • code of conduct, bio-safety issues, dealing with waste, transportation, ...
    • DIYbio Safety Workshop -- Sign-up Sheet
    • Science and Technology Innovation Program (STIP) Woodrow Wilson International Center for Scholars
      • also running an Inkling prediction markets at http://stip.inklingmarkets.com

Welcome Introduction by Joseph Jackson

• the importance of biotech
• what is IP and what the patent is not
• rethinking the biotech industry
  • eventually inspired by the FLOSS movement from IT
• DIY potential but not to overhype
  • http://biocurious.org
  • academia vs. hobbyists is probably not a productive conflict
  • eventually learn from astronomy

Theme 1: Genomics, Gene Patents, and the Future of Biology

• Retrospective on Human Genome Project, Prospective Look at Synthetic Biology
  • BioBricks, IGEM, ...
  • http://openwetware.org/wiki/Endy:Reprints
  • http://thedecisiontree.com/blog/thomas-goetz/
    • mention of 23andMe and the FDA problem
      • started earlier my Health#PersonalGenomics section
  • Q&A
    • remark on competition (including Venter) and how it can boost the process
      • Seedea:Research/Drive
• Luigi Palombi, author of Gene Cartels
  • very sarcastic but fundamental
  • study of IP, law, industry and who "profit" from the investment, public or not
  • ends at 12pm
• David Koepsell, author Who Owns You?
  • stream metaphor from Science to Engineering and the consequences on IP and patent eligibility
    • works very well with EET
• Our Biotech Future
  • http://www.nybooks.com/articles/archives/2007/jul/19/our-biotech-future/
• BioBazaar: The Open Source Revolution and Biotechnology
  • http://opensourcebiotech.anu.edu.au/Open_Source_Biotechnology/BioBazaar.html
• Gene Patents: Moving Beyond the Myriad Fallout
• Rochelle Dreyfuss, member SAGCHS
  • ~12:25pm on Innovation-related concerns
    • Research uses
    • Dev. of multiplex tests and whole genome sequencing
    • Use of data mining
    • Failure to report new mutations
• Misha Angrist, author Here Is a Human Being: At the Dawn of Personal Genomics
  • ~12:50pm Concluding Thoughts
• Nick Shockey, Director, Right to Research Coalition
  • Federal Research Public Access Act by Scholarly Publishing & Academic Resources Coalition (SPARC)
• see also
  • Biology
  • IntelligentBio
  • TheBiotechCentury

Theme 2: The Scientific Process

• missed /!\
  • (back at 2:55pm for panel Q&A)
  • ~3:02pm peer review favoring incremental rather than radical progress?
  • ~3:15pm proposal to cite a specific part of a paper (data, conclusion, method, ...)
• see also
  • Comment Ecrire La Science
  • AncientEpistemology
  • Popper's The Logic of Scientific Discovery
  • Gruber's Creativity, Psychology and the History of Science
  • Kuhn's The Structure of Scientific Revolutions

Theme 3: The rise of Distributed, Decentralized, Amateur/Citizen Science and Do It Yourself Biology

• David Vitrant, Mark Friedgan, Fund Science
  • ~3:20pm
• David Fries, president SciFlies
• Jason Blue Smith, Zach Berke, EurekaFund
• ~3:50 Q&A
  • social aspect as a key component, community support system
• ~4:45 the futur of curiosity and creativity (as an engine for science)
• ~4:55 A Biopunk Manifesto by maradydd, January 2010
• ~5:10pm Raymond McCauley
  • "a scientist is someone who has questions and want to find answers"
    • end of http://gnusha.org/transcripts/open-science-summit-2010/raymond-mccauley.html
  • http://www.diygenomics.org
• ~5:20pm Q&A
  • why DIY re-inventing "old" techniques?
• Open Source Sensing and Data Control Foresight Institute project
• ~5:45pm Special Agent Edward You, FBI
• see also
  • Hplus Summit Harvard

Theme 4: The Open Innovation Paradigm

• Aiden Hollis, Health Impact Fund/Incentives for Global Health
• Jamie Love, Knowledge Ecology International
• Q&A
  • http://www.ott.nih.gov/policy/phspat_policy.aspx
• ~10:45 Scott Johnson, Myelin Repair Foundation
• Craig Benson, Beyond Batten Foundation
• Beth Anne Baber, The Nicholas Conor Institute
• see also
  • Seedea:Seedea/InnovationChain
  • ManagingCreativityAndInnovation
  • VentureCapitalAndTheFinanceOfInnovation
  • TheMythsOfInnovation
  • RMLL-LSM#InnovationOuverte

Theme 5: Intellectual Property Management to Facilitate Collaborative Innovation

• ~1pm Nick Shockey http://www.righttoresearch.org
  • my own Seedea:Seedea/SandIdeabox#OAS
• (Offline from1pm to 3:30pm)
• see also
  • Seedea:Seedea/Licenses
  • Seedea:Seedea/CollaborativeManagementTools
  • RMLL-LSM
  • IntellectualProperty
  • TheFutureOfIdeas
  • InformationFeudalism

Theme 6: The Role of Universities

• Title: Alternative licensing solutions for Global Access by Rebecca Goulding
  • Global Access Licensing Framework (GALF) v2.0 Universities Allied for Essential Medicines May 2010
• Humanitarian rights clauses in contracts by Carol Mimura
  • Office of Intellectual Property & Industry Research Alliances
• see also
  • Education
  • François Taddei's conference during Hacking, recherche, transdisciplinarité et création à la marge

See also

• Open Science Summit 2010 – Thursday Review by Drew Halley, Singularity Hub July 2010
• Scientometrics 2.0: Toward new metrics of scholarly impact on the social Web by Jason Priem and Bradley M. Hemminger, First Monday Volume 15 Number 7 - 5 July 2010
• http://wiser-u.net/
• Wikipedia:Science Foo Camp
• the "other" http://oss2010.org/OSS 2010 aka The 6th International Conference on Open Source Systems

To explore

• CBRAIN and GBRAIN: A Distributed Platform for Brain Imaging Research by Tarek Sherif
• The Digitization of Science and the Degradation of the Scientific Method by Victoria Stodden, School of Information Dean's Lecture, May 2010

Overall remarks

• really bio/med focused

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